Publications

ZORA Publication List

Publications

• 2026

  • Journal Article

    • Tatarashvili, L., Von Fellenberg, N., Oppelt, K., & Hamm, P. (2026). Monomer and dimer pathways of earth-abundant manganese tricarbonyl pre-catalysts for CO 2 reduction studied by time-resolved IR spectroscopy. Physical Chemistry Chemical Physics (PCCP), 28, 2281–2293. https://doi.org/10.1039/d5cp03590b

• 2025

  • Journal Article

    • Janke, P., Dorbath, E., Stock, G., & Hamm, P. (2025). Universal structure in the relaxation of photoactive proteins Journal of Chemical Physics, 163, 210902. https://doi.org/10.1063/5.0299435
    • Aranda-Ruiz, S., Tatarashvili, L., Oppelt, K., & Hamm, P. (2025). Unveiling the Activation Pathway of the CO $_2$ Reduction Catalyst $trans$(Cl)-[Ru(X,X′-dimethyl-2,2′-bipyridine)(CO)$_2$Cl$_2$] by Direct Spectroscopic Observation ACS Catalysis, 15, 3023–3037. https://doi.org/10.1021/acscatal.4c06974
    • Hamm, P. (2025). Toward an FPGA-based dedicated computer for molecular dynamics simulations Journal of Chemical Physics, 162, 054108. https://doi.org/10.1063/5.0248834
    • Shukla, S., Shalit, A., & Hamm, P. (2025). 2D Raman-THz spectroscopy of imidazolium-based ionic liquids Journal of Chemical Physics, 162, 034502. https://doi.org/10.1063/5.0246152

• 2024

  • Journal Article

    • Gruber, C., Pupeikis, J., Camenzind, S. L., Willenberg, B., Camargo, F. V. A., Lang, L., Hamm, P., Rampur, A., Heidt, A., Phillips, C. R., Cerullo, G., & Keller, U. (2024). High-sensitivity pump-probe spectroscopy with a dual-comb laser and a PM-Andi supercontinuum Optics Letters, 49, 6445. https://doi.org/10.1364/ol.538105
    • Töpfer, K., Boittier, E., Devereux, M., Pasti, A., Hamm, P., & Meuwly, M. (2024). Force Fields for Deep Eutectic Mixtures: Application to Structure, Thermodynamics and 2D-Infrared Spectroscopy Journal of Physical Chemistry B, 128, 10937–10949. https://doi.org/10.1021/acs.jpcb.4c05480
    • Mousavi, S. J., Biggs, M. F., Johnson, J. A., Hamm, P., & Shalit, A. (2024). $\chi^{(2)}$-induced artifact overwhelming the third-order signal in 2D Raman–THz spectroscopy of non-centrosymmetric materials Journal of Chemical Physics, 161, 134502. https://doi.org/10.1063/5.0228378
    • Oppelt, K. T., & Hamm, P. (2024). FullThrOTTLE-TrIR: Time-Resolved IR Spectroscopy of Electrochemically Generated Species Using a Full Throughput Optically Transparent Thin-Layer Electrochemical Cell Journal of Physical Chemistry C, 128, 16040–16049. https://doi.org/10.1021/acs.jpcc.4c04947
    • Heckmeier, P. J., Ruf, J., Rochereau, C., & Hamm, P. (2024). A billion years of evolution manifest in nanosecond protein dynamics Proceedings of the National Academy of Sciences of the United States of America, 121, e2318743121. https://doi.org/10.1073/pnas.2318743121

• 2023

  • Journal Article

    • Helbing, J., & Hamm, P. (2023). Versatile Femtosecond Laser Synchronization for Multiple-Timescale Transient Infrared Spectroscopy ACS Applied Bio Materials, 127, 6347–6356. https://doi.org/10.1021/acs.jpca.3c03526
    • Buhrke, D., Lahav, Y., Rao, A., Ruf, J., Schapiro, I., & Hamm, P. (2023). Transient 2D IR Spectroscopy and Multiscale Simulations Reveal Vibrational Couplings in the Cyanobacteriochrome Slr1393-g3 Chemistry, 145, 15766–15775. https://doi.org/10.1021/jacs.3c00896
    • Heckmeier, P. J., Ruf, J., Janković, B. G., & Hamm, P. (2023). MCL-1 promiscuity and the structural resilience of its binding partners Journal of Chemical Physics, 158, 095101. https://doi.org/10.1063/5.0137239
    • Sertcan, B., Mousavi, S. J., Iannuzzi, M., & Hamm, P. (2023). Low-Frequency Anharmonic Couplings in Crystalline Bromoform: Theory Journal of Chemical Physics, 158, 014203. https://doi.org/10.1063/5.0134278

• 2022

  • Journal Article

    • Heckmeier, P. J., Ruf, J., Buhrke, D., Janković, B. G., & Hamm, P. (2022). Signal Propagation Within the MCL-1/BIM Protein Complex Journal of Molecular Biology, 434, 167499. https://doi.org/10.1016/j.jmb.2022.167499
    • Töpfer, K., Pasti, A., Das, A., Salehi, S. M., Vazquez-Salazar, L. I., Rohrbach, D., Feurer, T., Hamm, P., & Meuwly, M. (2022). Structure, Organization, and Heterogeneity of Water-Containing Deep Eutectic Solvents Journal of the American Chemical Society, 144, 14170–14180. https://doi.org/10.1021/jacs.2c04169
    • Buhrke, D., Michael, N., & Hamm, P. (2022). Vibrational couplings between protein and cofactor in bacterial phytochrome Agp1 revealed by 2D-IR spectroscopy Proceedings of the National Academy of Sciences of the United States of America, 119, e2206400119. https://doi.org/10.1073/pnas.2206400119
    • Mousavi, S. J., Berger, A., Hamm, P., & Shalit, A. (2022). Low-frequency anharmonic couplings in bromoform revealed from 2D Raman-THz spectroscopy: From the liquid to the crystalline phase Journal of Chemical Physics, 156, 174501. https://doi.org/10.1063/5.0090520
    • Bozovic, O., Jankovic, B., & Hamm, P. (2022). Using azobenzene photocontrol to set proteins in motion Nature Reviews Chemistry, 6, 112–124. https://doi.org/10.1038/s41570-021-00338-6
    • Salehi, S. M., Käser, S., Töpfer, K., Diamantis, P., Pfister, R., Hamm, P., Rothlisberger, U., & Meuwly, M. (2022). Hydration dynamics and IR spectroscopy of 4-fluorophenol Physical Chemistry Chemical Physics (PCCP), 24, 26046–26060. https://doi.org/10.1039/d2cp02857c

• 2021

  • Journal Article

    • Buhrke, D., Ruf, J., Heckmeier, P., & Hamm, P. (2021). A stop-flow sample delivery system for transient spectroscopy Review of Scientific Instruments, 92, 123001. https://doi.org/10.1063/5.0068227
    • Duchi, M., Shukla, S., Shalit, A., & Hamm, P. (2021). 2D-Raman-THz Spectroscopy with Single-Shot THz Detection Journal of Chemical Physics, 155, 174201. https://doi.org/10.1063/5.0065804
    • Jankovic, B., Bozovic, O., & Hamm, P. (2021). Intrinsic Dynamics of Protein–Peptide Unbinding Biochemistry, 60, 1755–1763. https://doi.org/10.1021/acs.biochem.1c00262
    • Jankovic, B., Ruf, J., Zanobini, C., Bozovic, O., Buhrke, D., & Hamm, P. (2021). Sequence of Events during Peptide Unbinding from RNase S: A Complete Experimental Description Journal of Physical Chemistry Letters, 12, 5201–5207. https://doi.org/10.1021/acs.jpclett.1c01155
    • Božović, O., Ruf, J., Zanobini, C., Jankovic, B., Buhrke, D., Johnson, P. J. M., & Hamm, P. (2021). The Speed of Allosteric Signaling Within a Single-Domain Protein Journal of Physical Chemistry Letters, 12, 4262–4267. https://doi.org/10.1021/acs.jpclett.1c00915
    • Oppelt, K. T., & Hamm, P. (2021). About Control: Kinetics in Molecule-based Photochemical Water Reduction Investigated by Transient IR Spectroscopy Chimia, 75, 188–194. https://doi.org/10.2533/chimia.2021.188
    • Hamm, P. (2021). Transient 2D IR spectroscopy from micro- to milliseconds Journal of Chemical Physics, 154, 104201. https://doi.org/10.1063/5.0045294
    • Tek, G., & Hamm, P. (2021). Transient CO desorption from thin Pt films induced by mid-IR pumping Journal of Chemical Physics, 154, 084706. https://doi.org/10.1063/5.0041216
    • Shalit, A., Mousavi, S. J., & Hamm, P. (2021). 2D Raman–THz Spectroscopy of Binary CHBr3–MeOH Solvent Mixture Journal of Physical Chemistry B, 125, 581–586. https://doi.org/10.1021/acs.jpcb.0c08962
    • Oppelt, K. T., Sevéry, L., Utters, M., Tilley, S. D., & Hamm, P. (2021). Flexible to rigid: IR spectroscopic investigation of a rhenium-tricarbonyl-complex at a buried interface Physical Chemistry Chemical Physics (PCCP), 23, 4311–4316. https://doi.org/10.1039/d0cp06546c
    • Ruf, J., Hamm, P., & Buhrke, D. (2021). Needles in a haystack: H-bonding in an optogenetic protein observed with isotope labeling and 2D-IR spectroscopy Physical Chemistry Chemical Physics (PCCP), 23, 10267–10273. https://doi.org/10.1039/d1cp00996f
    • Kutus, B., Shalit, A., Hamm, P., & Hunger, J. (2021). Dielectric response of light, heavy and heavy-oxygen water: isotope effects on the hydrogen-bonding network’s collective relaxation dynamics. Physical Chemistry Chemical Physics (PCCP), 23, 5467–5473. https://doi.org/10.1039/d0cp06460b

• 2020

  • Journal Article

    • Buhrke, D., Oppelt, K. T., Heckmeier, P. J., Fernandez-Teran, R., & Hamm, P. (2020). Nanosecond protein dynamics in a red/green cyanobacteriochrome revealed by transient IR spectroscopy Journal of Chemical Physics, 153, 245101. https://doi.org/10.1063/5.0033107
    • Bozovic, O., Jankovic, B., & Hamm, P. (2020). Sensing the allosteric force Nature Communications, 11, 5841. https://doi.org/10.1038/s41467-020-19689-7
    • Farrell, K. M., Ostrander, J. S., Jones, A. C., Yakami, B. R., Dicke, S. S., Middleton, C. T., Hamm, P., & Zanni, M. T. (2020). Shot-to-shot 2D IR spectroscopy at 100 kHz using a Yb laser and custom-designed electronics Optics Express, 28, 33584. https://doi.org/10.1364/oe.409360
    • Fernández-Terán, R., & Hamm, P. (2020). A closer look into the distance dependence of vibrational energy transfer on surfaces using 2D IR spectroscopy Journal of Chemical Physics, 153, 154706. https://doi.org/10.1063/5.0025787
    • Bozovic, O., Zanobini, C., Gulzar, A., Jankovic, B., Buhrke, D., Post, M., Wolf, S., Stock, G., & Hamm, P. (2020). Real-time observation of ligand-induced allosteric transitions in a PDZ domain Proceedings of the National Academy of Sciences of the United States of America, 117, 26031–26039. https://doi.org/10.1073/pnas.2012999117
    • Tek, G., & Hamm, P. (2020). A Correction Scheme for Fano Line Shapes in Two-Dimensional Infrared Spectroscopy Journal of Physical Chemistry Letters, 11, 6185–6190. https://doi.org/10.1021/acs.jpclett.0c01752
    • Sidler, D., & Hamm, P. (2020). A Feynman diagram description of the 2D-Raman-THz response of amorphous ice Journal of Chemical Physics, 153, 044502. https://doi.org/10.1063/5.0018485
    • Oppelt, K., Mosberger, M., Ruf, J., Fernandez-Teran, R., Probst, B., Alberto, R., & Hamm, P. (2020). Shedding Light on the Molecular Surface Assembly at the Nanoscale Level: Dynamics of a Re(I) Carbonyl Photosensitizer with a Coadsorbed Cobalt Tetrapyridyl Water Reduction Catalyst on ZrO2 Journal of Physical Chemistry C, 124, 12502–12511. https://doi.org/10.1021/acs.jpcc.0c02556
    • Fernandez-Teran, R., Ruf, J., & Hamm, P. (2020). Vibrational Couplings in Hydridocarbonyl Complexes: A 2D-IR Perspective Inorganic Chemistry, 59, 7721–7726. https://doi.org/10.1021/acs.inorgchem.0c00750
    • Weder, N., Probst, B., Sévery, L., Fernández-Terán, R. J., Beckord, J., Blacque, O., Tilley, S. D., Hamm, P., Osterwalder, J., & Alberto, R. (2020). Mechanistic insights into photocatalysis and over two days of stable H2 generation in electrocatalysis by a molecular cobalt catalyst immobilized on TiO2 Catalysis Science & Technology, 10, 2549–2560. https://doi.org/10.1039/d0cy00330a

• 2019

  • Journal Article

    • Oppelt, K., Fernández-Terán, R., Pfister, R., & Hamm, P. (2019). Geminate Recombination versus Cage Escape in the Reductive Quenching of a Re(I) Carbonyl Complex on Mesoporous ZrO2 Journal of Physical Chemistry C, 123, 19952–19961. https://doi.org/10.1021/acs.jpcc.9b04950
    • Hamm, P. (2019). Velocity echoes in water Journal of Chemical Physics, 151, 054505. https://doi.org/10.1063/1.5112163
    • Ciardi, G., Berger, A., Hamm, P., & Shalit, A. (2019). Signatures of Intra- and Intermolecular Vibrational Coupling in Halogenated Liquids Revealed by Two-Dimensional Raman-Terahertz Spectroscopy Journal of Physical Chemistry Letters, 10, 4463–4468. https://doi.org/10.1021/acs.jpclett.9b01528
    • Jankovic, B., Gulzar, A., Zanobini, C., Bozovic, O., Wolf, S., Stock, G., & Hamm, P. (2019). Photocontrolling Protein–Peptide Interactions: From Minimal Perturbation to Complete Unbinding Journal of the American Chemical Society, 141, 10702–10710. https://doi.org/10.1021/jacs.9b03222
    • Wodak, S. J., Paci, E., Dokholyan, N. V., Berezovsky, I. N., Horovitz, A., Li, J., Hilser, V. J., Bahar, I., Karanicolas, J., Stock, G., Hamm, P., Stote, R. H., Eberhardt, J., Chebaro, Y., Dejaegere, A., Cecchini, M., Changeux, J.-P., Bolhuis, P. G., Vreede, J., … et al. (2019). Allostery in Its Many Disguises: From Theory to Applications Structure, 27, 566–578. https://doi.org/10.1016/j.str.2019.01.003
    • Berger, A., Ciardi, G., Sidler, D., Hamm, P., & Shalit, A. (2019). Impact of nuclear quantum effects on the structural inhomogeneity of liquid water Proceedings of the National Academy of Sciences of the United States of America, 116, 2458–2463. https://doi.org/10.1073/pnas.1818182116
    • Hamm, P., & Sidler, D. (2019). Feynman Diagram Description of 2D-Raman-THz Spectroscopy Applied to Water Journal of Chemical Physics, 150, 044202. https://doi.org/10.1063/1.5079497

• 2018

  • Journal Article

    • Zanobini, C., Bozovic, O., Jankovic, B., Koziol, K. L., Johnson, P. J. M., Hamm, P., Gulzar, A., Wolf, S., & Stock, G. (2018). Azidohomoalanine: A Minimally Invasive, Versatile, and Sensitive Infrared Label in Proteins To Study Ligand Binding Journal of Physical Chemistry B, 122, 10118–10125. https://doi.org/10.1021/acs.jpcb.8b08368

Pagination